yrhH [2019-01-30 13:14:19]

similar to methyltransferase

locus: BSU27180

pI: 10.16

mw: 20.99 kDa

protein length: 180 aa

gene length: 543 bp

function: unknown

product: unknown

essential: no

synonyms

Genomic Context

categories

• [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.2|Cell envelope stress proteins (controlled by SigM, V, W, X, Y)]
• [category|SW 6|Groups of genes] → [category|SW 6.6|Poorly characterized/ putative enzymes]

Gene

Coordinates: 2,777,877 2,778,419

The protein

Protein family

• methyltransferase superfamily (according to Swiss-Prot)

Expression and Regulation

Operons

• genes: [gene|6D5089931FBDB398A7FAF3C8DDF341EB4949AEFE|yrhH]
  description: [Pubmed|9683469]

  sigma factors

  • [protein|3D974DD2967C7F8FD4E3C2AF42617B8AE9F0296D|SigW]: sigma factor, [Pubmed|9683469], in [regulon|3D974DD2967C7F8FD4E3C2AF42617B8AE9F0296D|SigW regulon]
  • [protein|081DF3EE9FA56209D648C7677188C61CE3AA8E41|SigM]: sigma factor, [Pubmed|18179421], in [regulon|081DF3EE9FA56209D648C7677188C61CE3AA8E41|SigM regulon]
  • [protein|E77364F274A520FCCA9F5C9504E317B047BA29E6|SigX]: sigma factor, [Pubmed|9683469], in [regulon|E77364F274A520FCCA9F5C9504E317B047BA29E6|SigX regulon]

  regulation

  • Expressed under stress conditions ([protein|search|SigW], [protein|search|SigX]) [Pubmed|9683469]

  additional information

  • the mRNA is substantially stabilized upon depletion of [gene|872CCB5A49C9000BD95E4B0472556D5F60F7D7A4|RNase Y] [PubMed|21815947]

• genes: [gene|6D5089931FBDB398A7FAF3C8DDF341EB4949AEFE|yrhH]-[gene|3DA3FFB295F5513A220CB163994EE0F356C810E6|fatR]-[gene|4BA5214C441C6671CB7DAA3CACBCA5FC025BE0E6|yrhJ]
  description: [Pubmed|18179421]

  regulation

  • Expressed under stress conditions ([protein|search|SigW], [protein|search|SigX]) [Pubmed|9683469]

  additional information

  • A [protein|search|ncRNA] ([SW|RnaC]) is encoded between '[protein|search|yrhK]' and '[protein|search|yrhJ]' [PubMed|25790031]

Biological materials

Mutant

• BKE27180 ([gene|6D5089931FBDB398A7FAF3C8DDF341EB4949AEFE|yrhH]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE27180 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTTAAACACCTGCTTTT, downstream forward: _UP4_TAAAAAATTTCTCGGGAAAT
• BKK27180 ([gene|6D5089931FBDB398A7FAF3C8DDF341EB4949AEFE|yrhH]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK27180 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTTAAACACCTGCTTTT, downstream forward: _UP4_TAAAAAATTTCTCGGGAAAT

References

• 21926231,9683469,18179421,21815947